Publications

Dudley, Peter N., Sara N. John, Miles E. Daniels, and Eric M. Danner. 2022. Using decades of spawning data and hydraulic models to construct a temperature-dependent resource selection function for management of an endangered salmonid. Canadian Journal of Fisheries and Aquatic Science 79(1):73-81.
https://doi.org/10.1139/cjfas-2021-0022
Michel, Cyril J., Jeremy J. Notch, Flora Cordoleani, Arnold J. Ammann, and Eric M. Danner. 2021. Nonlinear survival of imperiled fish informs managed flows in a highly modified river. Ecosphere 12(5):e03498 (20 p.).
https://doi.org/10.1002/ecs2.3498
Muhling, B. A., Snyder, S., Hazen, E. L., Whitlock, R. E., Dewar, H., Park, J-.Y., Stock, C. A., Block, B. A. 2022. Risk and reward in foraging migrations of North Pacific Albacore determined from estimates of energy intake and movement costs. Frontiers in Marine Science.
Cordoleani, F., Phillis, C.C., Sturrock, A.M., FitzGerald A. M., Malkassian A., Whitman G. E., Weber P. K., and Johnson, R. C. 2021. Threatened salmon rely on a rare life history strategy in a warming landscape. Nature Climate Change. 11, 982–988.
Bell-Tilcock M., Jeffres C., Rypel A., Sommer T., Whitman G., and Johnson R.C. 2021. Advancing diet reconstruction in fish eye lenses. Methods in Ecology and Evolution. 00:1-9.
Demetras, N. J., Helwig, B. A., McHuron, A. S. 2020. Reported Vessel Strike as a Source of Mortality of White Sturgeon in San Francisco Bay. California Fish and Game, 106(1), 59-65.
Dudley, P. N., John, S. N., Daniels, M. E., Danner, E. M. 2021. Using decades of spawning data and hydraulic models to construct a temperature dependent resource selection function for management of an endangered salmonid. Canadian Journal of Fisheries and Aquatic Sciences, (ja).
Michel, C. J., Notch, J. J., Cordoleani, F., Ammann, A. J., and Danner, E. M.. 2021. Nonlinear survival of imperiled fish informs managed flows in a highly modified river. Ecosphere 12( 5):e03498.
Nelson, T.R., Michel, C.J., Gary, M.P., Lehman, B.M., Demetras, N.J., Hammen, J.J. and Horn, M.J. 2021. Effects of Artificial Lighting at Night on Predator Density and Salmonid Predation. Transactions of the American Fisheries Society, 150: 147-159.
Cordoleani F., Satterthwaite W.H., Daniels M.E., Johnson M.R. 2020. Using Life-Cycle Models to Identify Monitoring Gaps for Central Valley Spring-Run Chinook. San Francisco Estuary and Watershed Science. 2020, 18 (4).
Daniels, M. E., Danner, E. M. 2020. The drivers of river temperatures below a large dam. Water Resources Research, 56, e2019WR026751.
Lehman B., Johnson R.C., Foote S., Som N., Burgess T., Adkison M., Miller K., Hallet S., Purcell M., Martinez B., Connon R., Fangue N., and Collins A. Disease in Central Valley Salmonids: status and lessons from other systems. 2020. San Francisco Estuary and Watershed Sciences. 18:3.
Martin, B.T., P. N. Dudley, N. S. Kashef, D. M. Stafford, W. J. Reeder, D. Tonina, A. M. Del Rio, J. Scott Foott, and E. M. Danner. The biophysical basis of thermal tolerance in fish eggs. Proceedings of the Royal Society B: Biological Sciences, vol. 287, no. 1937, pp. 20201550–9, Oct. 2020.
Michel, C. J., M. J. Henderson, C. M. Loomis, J. M. Smith, N. J. Demetras, I. S. Iglesias, B. M. Lehman, and D. D. Huff. 2020. Fish predation on a landscape scale. Ecosphere 11:e03168.
Michel, C. J., J. M. Smith, B. M. Lehman, N. J. Demetras, D. D. Huff, P. L. Brandes, J. A. Israel, T. P. Quinn, and S. A. Hayes. 2020. Limitations of Active Removal to Manage Predatory Fish Populations. North American Journal of Fisheries Management 40:3-16.
Notch, J.J., McHuron, A.S., Michel, C.J. et al. 2020. Outmigration survival of wild Chinook salmon smolts through the Sacramento River during historic drought and high water conditions. Environmental Biology of Fishes.
Stewart, A.R., Feyrer, F. and Johnson, R.C., 2020. Resolving selenium exposure risk: Spatial, temporal, and tissue-specific variability of an endemic fish in a large, dynamic estuary. Science of the Total Environment, 707, p.135919.
Crozier L.G., McClure M.M., Beechie T., Bograd S.J., Boughton D.A., Carr M., Cooney T.D., Dunham J.B., Greene C.M., Haltuch M.A., Hazen E.L., Holzer D.M., Huff D.D., Johnson R.C., Jordan C.E., Kaplan I.C., Lindley S.T., Mantua N.J., Moyle P.B., Myers J.M., Nelson M.W., Spence B.C., Weitkamp L.A., Williams T.H., Willis‑Norton E. 2019. Climate vulnerability assessment for Pacific salmon and steelhead in the California Current Large Marine Ecosystem. PLoS ONE.
Friedman, W. R., B. T. Martin, B. K. Wells, P. Warzybok, C. J. Michel, E. M. Danner, and S. T. Lindley. 2019. Modeling composite effects of marine and freshwater processes on migratory species. Ecosphere 10(7): e02743.
Henderson, M. J., I. S. Iglesias, C. J. Michel, A. J. Ammann, and D. D. Huff. 2019. Estimating spatial–temporal differences in Chinook salmon outmigration survival with habitat- and predation-related covariates. Canadian Journal of Fisheries and Aquatic Sciences 76:1549-1561.
Lehman, B. L., M. P. Gary, N. J. Demetras, and C. J. Michel. 2019. Where Predators and Prey Meet: Anthropogenic Contact Points Between Fishes in a Freshwater Estuary. San Francisco Estuary and Watershed Science, 17.
Lehman, B.M., Johnson, R.C., Adkison, M., Burgess, O.T., Connon, R.E., Fangue, N.A, et al. 2020. Disease in Central Valley Salmon: Status and Lessons from Other Systems. San Francisco Estuary and Watershed Science, 18(3).
Michel, C. J. 2019. Decoupling outmigration from marine survival indicates outsized influence of streamflow on cohort success for California’s Chinook salmon populations. Canadian Journal of Fisheries and Aquatic Sciences, 76:1398-1410.
Munsch S.H., Correigh G.M., Johnson R.C., Satterthwaite W.H., Imaki H., Brandes P. 2019. Warm, dry winters truncate timing and size distribution of seaward-migrating salmon across a large, regulated watershed. Ecological Application.
Zarri, L. J., E. M. Danner, M. E. Daniels, and E. P. Palkovacs. 2019. Managing hydropower dam releases for water users and imperiled fishes with contrasting thermal habitat requirements. Journal of Applied Ecology.
Lee R. Harrison, Erin Bray, Brandon Overstreet, Carl J. Legleiter, Rocko A. Brown, Joseph E. Merz, Rosealea M. Bond, Colin L. Nicol, Thomas Dunne. 2019. Physical Controls on Salmon Redd Site Selection in Restored Reaches of a Regulated, Gravel-Bed River. [PDF]. Water Resources Research.
Cordoleani, F., J. Notch, A. McHuron, A. J. Ammann, and C. J. Michel. 2018. Movement and survival of wild Chinook salmon smolts from Butte Creek during their out-migration to the ocean: comparison of a dry year versus a wet year. Transactions of the American Fisheries Society 147: 171– 184.